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The complex reaction network of catalytic biomass conversions often involves hundreds of surface intermediates and thousands of reaction steps, greatly hindering the rational design of metal catalysts for these conversions. Here, we present a framework of machine learning (ML)-accelerated first-principles studies for the hydrodeoxygenation (HDO) of propanoic acid over transition metal surfaces. The microkinetic model (MKM) is initially parametrized by ML-predicted energies and iteratively improved by identifying the rate-determining species and steps (RDS), computing their energies by density functional theory (DFT), and reparameterizing the MKM until all the RDS are computed by DFT. The Gaussian process (GP) model performs significantlymore » better than the linear ridge regression model for predicting both the adsorption free energies and transition state free energies. Parameterized with energies from the GP model, only 5–20% of the full reaction network has to be computed by DFT for the MKM to possess DFT-level accuracy for the TOF and dominant reaction pathway. While the linear ridge regression model performs worse than the GP model, its performance is greatly improved when only transition states are predicted by the regression model and adsorption energies are computed by DFT. Overall, we find that a high accuracy in adsorption free energies is more important for a reliable MKM than a high accuracy in TS free energies. Lastly, based on the GP model with GOH and GCHCHCO as catalyst descriptors, we build two-dimensional volcano plots in activity and selectivity that can help design promising alloy catalysts for HDO reactions of organic acids.« less

Computation of adsorption and transition state energies for a large number of surface intermediates for numerous active site models pose significant computational overhead in computational screening of catalysts. Machine learning (ML) techniques can be used to predict part of these energies. To predict the energies, ML models need to be fed appropriate metal and species descriptors. For complex surface chemistries, the structures of the intermediate species can vary greatly. In this paper, working with the hydrodeoxygenation of succinic acid on six different metal surfaces, we have studied the effect of linear and non-linear ML models used along with pen-and-paper basedmore » species descriptors and two categories of metal descriptors on two different categories of intermediate species: chain and ring. More specifically, our computations include the prediction of chain species when trained on only chain species and also when trained on both chain and ring species. Similar computations were performed for predictions of ring species. In each case, results of linear ML models were compared with kernel based non-linear models. Our results indicate that ring species data does not improve the prediction of chain species. Similarly, chain species data does not improve the prediction of ring species. The use of non-linear ML models, however, did help to minimize the prediction errors compared to the linear models. Furthermore, the study also shows that electronic or adsorption energy based metal descriptors along with bond count based species fingerprints can achieve a mean absolute error (MAE) of less than 0.2 eV for complex chain molecules when used with an appropriate machine learning model.« less

Computational catalyst discovery involves the development of microkinetic reactor models based on estimated parameters determined from density functional theory (DFT). For complex surface chemistries, the number of reaction intermediates can be very large, and the cost of calculating the adsorption energies by DFT for all surface intermediates even for one active site model can become prohibitive. In this paper, we have identified appropriate descriptors and machine learning models that can be used to predict a significant part of these adsorption energies given data on the rest of them. Furthermore, our investigations also included the case when the species data usedmore » to train the predictive model are of different size relative to the species the model tries to predict—this is an extrapolation in the data space which is typically difficult with regular machine learning models. Due to the relative size of the available data sets, we have attempted to extrapolate from the larger species to the smaller ones in the current work. Here, we have developed a neural network based predictive model that combines an established additive atomic contribution based model with the concepts of a convolutional neural network that, when extrapolating, achieves a statistically significant improvement over the previous models.« less

Computational catalyst screening has the potential to significantly accelerate heterogeneous catalyst discovery. Typically, this involves developing microkinetic reactor models that are based on parameters obtained from density functional theory and transition-state theory. To reduce the large computational cost involved in computing various adsorption and transition-state energies of all possible surface states on a large number of catalyst models, linear scaling relations for surface intermediates and transition states have been developed that only depend on a few, typically one or two descriptors, such as the carbon atom adsorption energy. As a result, only the descriptor values have to be computed formore » various active site models to generate volcano curves in activity or selectivity. Unfortunately, for more complex chemistries the predictability of linear scaling relations is unknown. Also, the selection of descriptors is essentially a trial and error process. Here, using a database of adsorption energies of the surface species involved in the decarboxylation and decarbonylation of propionic acid over eight monometalic transition-metal catalyst surfaces (Ni, Pt, Pd, Ru, Rh, Re, Cu, Ag), we tested if nonlinear machine learning (ML) models can outperform the linear scaling relations in prediction accuracy when predicting the adsorption energy for various species on a metal surface based on data from the rest of the metal surfaces. We found linear scaling relations to hold well for predictions across metals with a mean-absolute error of 0.12 eV, and ML methods being unable to outperform linear scaling relations when the training dataset contains a complete set of energies for all of the species on various metal surfaces. Only when the training dataset is incomplete, namely, contains a random subset of species’ energies for each metal, a currently unlikely scenario for catalyst screening, do kernel-based ML models significantly outperform linear scaling relations. We also found that simple coordinate-free species descriptors, such as bond counts, achieve as good results as sophisticated coordinate-based descriptors. Finally, we propose an approach for automatic discovery of appropriate metal descriptors using principal component analysis.« less